The goal of CAMEO is to continuously evaluate the accuracy and reliability of protein structure prediction servers, e.g. tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. We invite all server developers to register their services to CAMEO.

Please choose the prediction category for which you would like to register your server:

Requirements:

In order to be included in CAMEO, a protein 3D structure prediction server must fulfill the following technical requirements:

  • The server accepts amino acid sequences in FASTA (or raw) format as input via a web submission form (e.g. cgi) (Note: If your server is registered for the CASP experiment, it already fulfills all technical requirements and you can use the same technology for CAMEO).
  • The service is in continuous operation (24/7), and is able to handle a reasonable number of requests submitted through this interface.
  • The service predicts 3-dimensional protein structures in PDB format, results are returned by email.
  • Only 1 model per target will be included in the aggregated score. If a server returns more than one model, only the model numbered as #1 will be used for compiling aggregate scores.
  • Variations of a service (e.g. longest model vs. best template) should to be registered individually.
Administrative Information
Name of the group leader responsible for the service, Address, Institute
Email of the group leader responsible for the service
Responsible for operating the server
Notifications
Technical Information
e.g. http://www.myserver/services/tool.cgi
Which variable name is used in the server cgi to specify the request title?
Which variable name is used in the server cgi to specify the amino acid sequence?
Which variable name is used in the server cgi to specify the email address, to which the results will be sent? Please specify here any additional parameters that should be part of the request, e.g. method=fast&format=new
URL Preview (method:)

By registering your service in CAMEO, you agree to the terms and conditions outlined below.

Requirements:

In order to be included in CAMEO, a server must fulfill the following technical requirements:

  • The server accepts amino acid sequences in FASTA (or raw) format as input via a web submission form (e.g. cgi) (Note: If your server is registered for the CASP experiment, it in principle fulfills all technical requirements and you can use the same technology for CAMEO). Preferred, however, is the new CAMEO LB prediction format, alleviating all drawbacks of the CASP FN category prediction format.
  • The service is in continuous operation (24/7), and is able to handle a reasonable number of requests submitted through this interface.
  • The service predicts Ligand Binding Site Residues in the CAMEO LB prediction format, results are returned by email.
  • It is encouraged that variations of a service should be registered individually, enabling straightforward performance analysis.
Administrative Information
Name of the group leader responsible for the service, Address, Institute
Email of the group leader responsible for the service
Responsible for operating the server
Notifications
Technical Information
e.g. http://www.myserver/services/tool.cgi
Which variable name is used in the server cgi to specify the request title?
Which variable name is used in the server cgi to specify the amino acid sequence?
Which variable name is used in the server cgi to specify the email address, to which the results will be sent? Please specify here any additional parameters that should be part of the request, e.g. method=fast&format=new
URL Preview (method:)

By registering your service in CAMEO, you agree to the terms and conditions outlined below.

Requirements:

In order to be included in CAMEO, a server must fulfill the following technical requirements:

  • The server accepts models in PDB format and sequences in FASTA (or raw) format as input via a web submission form (e.g. cgi).
  • The service is in continuous operation (24/7), and is able to handle a reasonable number of requests submitted through this interface.
  • The service estimates local model quality in the CAMEO QE prediction format, results are returned by email.
  • It is encouraged that variations of a service should be registered individually, enabling straightforward performance analysis.
  • Coordinates of structures to be evaluated are provided in PDB format, and later in 2014 in the new mmCIF/PDBx standard data exchange format.
    Typically in experimental structural biology, the B-Factor field is used to express the uncertainty of the coordinates (more). Thus, for CAMEO-QE we propose to use the B-Factor field to specify the expected local atomic coordinate of a model. Specifically:
  • Local error estimates should be assigned to all atom coordinate records present in the model
  • Errors should be expressed as positive distance in A between the model atom and the corresponding atom in the reference structure. (Negative values are considered as “non-predictions”)
  • Error estimates should be inserted into the B-factor field (columns 61-66 in PDB format) without changing any other field in the provided model coordinates. (Remarks and other information can be added using the REMARK fields)
  • Please do not change any other part of the ATOM section
You can validate your server here

Administrative Information
Name of the group leader responsible for the service, Address, Institute
Email of the group leader responsible for the service
Responsible for operating the server
Notifications
Technical Information
e.g. http://www.myserver/services/tool.cgi
Which variable name is used in the server cgi to specify the request title?
Which variable name is used in the server cgi to specify the PDB formatted structure upload?
Which variable name is used in the server cgi to specify the amino acid sequence?
Which variable name is used in the server cgi to specify the email address, to which the results will be sent? Please specify here any additional parameters that should be part of the request, e.g. method=fast&format=new
URL Preview (method:)

By registering your service in CAMEO, you agree to the terms and conditions outlined below.

Requirements:

In order to be included in CAMEO, a server must fulfill the following technical requirements:

  • The server accepts sequences in FASTA format (multiple sequence FASTA format for hetero oligomers) as input via a web submission form (e.g. cgi).
  • The service is in continuous operation (24/7), and is able to handle a reasonable number of requests submitted through this cgi interface.
  • The service predicts residue-residue contacts in the CAMEO CP prediction format, results are returned by email.
  • It is encouraged that variations of a service should be registered individually, enabling straightforward performance analysis.
You can validate your server here

Administrative Information
Name of the group leader responsible for the service, Address, Institute
Email of the group leader responsible for the service
Responsible for operating the server
Notifications
Technical Information
e.g. http://www.myserver/services/tool.cgi
Which variable name is used in the server cgi to specify the request title?
Which variable name is used in the server cgi to specify the amino acid sequence?
Which variable name is used in the server cgi to specify the email address, to which the results will be sent? Please specify here any additional parameters that should be part of the request, e.g. method=fast&format=new
URL Preview (method:)

By registering your service in CAMEO, you agree to the terms and conditions outlined below.