List of Participating Servers
| Server Name (CP) | Server Alias | Active Since | Deactived Since | Weblink | Server Type | ||||
|---|---|---|---|---|---|---|---|---|---|
| Server 0 | server0 | 2016-03-14 | devel |
Development server - no detailed description available |
None | 0_CP | ZZZserver 00 | ||
| Server 10 | server10 | 2018-09-14 | devel |
Development server - no detailed description available |
47.0 | 10_CP | ZZZserver 10 | ||
| Server 11 | server11 | 2018-09-14 | devel |
Development server - no detailed description available |
116.0 | 11_CP | ZZZserver 11 | ||
| Server 12 | server12 | 2018-11-01 | devel |
Development server - no detailed description available |
7.0 | 12_CP | ZZZserver 12 | ||
| NaiveContactMI | server1 | 2016-03-14 | public |
As a baseline for the contact prediction, we use mutual information (MI) to predict the most likely contacts from a multiple sequence alignment (MSA) obtained with HHblits. Specifically the MSA for the target protein is obtained from a search against the UniProt nr20 database. For our calculation of MI, we use the small number correction introduced by Buslje et al. [Bulsje et al, Bioinformatics 25:1125-1131, 2009], which simply consists in adding a small number (here 0.05) to the number of observations of any residue pair when calculating the probabilities. Gaps are not counted as an amino acid type and are therefore not included in the calculation of MI, whereas we always use the total number of sequences in the alignment as normalisation factor in the calculation of the probabilities. This effectively penalises columns with gaps in the calculation of MI. |
0.0 | 1_CP | NaiveContactMI | ||
| NaiveContactMIp | server2 | 2016-04-14 | public | - | 0.0 | 2_CP | NaiveContactMIp | ||
| NaiveContactMIpz | server3 | 2016-04-14 | public | - | 0.0 | 3_CP | NaiveContactMIpz | ||
| CevoMI | server4 | 2016-04-14 | public | - | 0.0 | 4_CP | cevoMI | ||
| Server 5 | server5 | 2016-04-25 | devel |
Development server - no detailed description available |
32.0 | 5_CP | ZZZserver 05 | ||
| Server 7 | server7 | 2017-09-25 | devel |
Development server - no detailed description available |
2092.0 | 7_CP | ZZZserver 07 | ||
| DeepCDpred | server8 | 2017-11-03 | DeepCDpred | public | - | None | 8_CP | DeepCDpred | |
| Server 9 | server9 | 2018-03-14 | devel |
Development server - no detailed description available |
2125.0 | 9_CP | ZZZserver 09 |
Server list not available for the CM category at the moment.