Server Name (CP) Server Alias Active Since Deactived Since Weblink Server Type
Server 0 server0 2016-03-14 devel

Development server - no detailed description available

None 0_CP ZZZserver 00
Server 10 server10 2018-09-14 devel

Development server - no detailed description available

47.0 10_CP ZZZserver 10
Server 11 server11 2018-09-14 devel

Development server - no detailed description available

116.0 11_CP ZZZserver 11
Server 12 server12 2018-11-01 devel

Development server - no detailed description available

7.0 12_CP ZZZserver 12
NaiveContactMI server1 2016-03-14 public

As a baseline for the contact prediction, we use mutual information (MI) to predict the most likely contacts from a multiple sequence alignment (MSA) obtained with HHblits. Specifically the MSA for the target protein is obtained from a search against the UniProt nr20 database. For our calculation of MI, we use the small number correction introduced by Buslje et al. [Bulsje et al, Bioinformatics 25:1125-1131, 2009], which simply consists in adding a small number (here 0.05) to the number of observations of any residue pair when calculating the probabilities. Gaps are not counted as an amino acid type and are therefore not included in the calculation of MI, whereas we always use the total number of sequences in the alignment as normalisation factor in the calculation of the probabilities. This effectively penalises columns with gaps in the calculation of MI.

0.0 1_CP NaiveContactMI
NaiveContactMIp server2 2016-04-14 public - 0.0 2_CP NaiveContactMIp
NaiveContactMIpz server3 2016-04-14 public - 0.0 3_CP NaiveContactMIpz
CevoMI server4 2016-04-14 public - 0.0 4_CP cevoMI
Server 5 server5 2016-04-25 devel

Development server - no detailed description available

32.0 5_CP ZZZserver 05
Server 7 server7 2017-09-25 devel

Development server - no detailed description available

2092.0 7_CP ZZZserver 07
DeepCDpred server8 2017-11-03 DeepCDpred public - None 8_CP DeepCDpred
Server 9 server9 2018-03-14 devel

Development server - no detailed description available

2125.0 9_CP ZZZserver 09

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